Class: Participant Assertion (ParticipantAssertion)

Assertion about a particular Participant. May include Conditions, Measurements, etc.

URI: kfi_fhir_sparks:ParticipantAssertion

classDiagram class ParticipantAssertion click ParticipantAssertion href "../ParticipantAssertion/" ParticipantAssertion : age_at_assertion ParticipantAssertion --> "0..1" AgeAt : age_at_assertion click AgeAt href "../AgeAt/" ParticipantAssertion : age_at_event ParticipantAssertion --> "0..1" AgeAt : age_at_event click AgeAt href "../AgeAt/" ParticipantAssertion : age_at_onset ParticipantAssertion --> "0..1" AgeAt : age_at_onset click AgeAt href "../AgeAt/" ParticipantAssertion : age_at_resolution ParticipantAssertion --> "0..1" AgeAt : age_at_resolution click AgeAt href "../AgeAt/" ParticipantAssertion : assertion_code ParticipantAssertion : assertion_source ParticipantAssertion : assertion_text ParticipantAssertion : assertion_type ParticipantAssertion --> "1" EnumAssertionType : assertion_type click EnumAssertionType href "../EnumAssertionType/" ParticipantAssertion : body_laterality ParticipantAssertion : body_location ParticipantAssertion : body_site ParticipantAssertion : cancer_stage ParticipantAssertion : entity_asserter ParticipantAssertion --> "0..1" EnumEntityAsserter : entity_asserter click EnumEntityAsserter href "../EnumEntityAsserter/" ParticipantAssertion : other_condition_modifiers ParticipantAssertion : participant_assertion_id ParticipantAssertion : participant_id ParticipantAssertion --> "1" Participant : participant_id click Participant href "../Participant/" ParticipantAssertion : value_code ParticipantAssertion : value_number ParticipantAssertion : value_string ParticipantAssertion : value_units

Slots

Name	Cardinality and Range	Description	Inheritance
participant_assertion_id	1 String	Participant Assertion Global ID	direct
participant_id	1 Participant	The Global ID for the Participant	direct
age_at_event	0..1 AgeAt	The date or age at which the event relating to this assertion occured	direct
age_at_assertion	0..1 AgeAt	The date or age at which this condition is being asserted	direct
age_at_onset	0..1 AgeAt	The age of onset for this condition	direct
age_at_resolution	0..1 AgeAt	The age at which this condition was resolved, abated, or cured	direct
entity_asserter	0..1 EnumEntityAsserter	Who recorded this assertion about the Participant? This can support understan...	direct
other_condition_modifiers	0..1 Uriorcurie	Any additional modifiers for this condition, such as severity	direct
assertion_type	1 EnumAssertionType	Describe the type of assertion being made	direct
assertion_code	1 Uriorcurie	The structured term defining the meaning of the assertion	direct
assertion_text	0..1 String	Detailed description / free text about this assertion	direct
assertion_source	0..1 Uriorcurie	Where or how was this this assertion about the Participant recorded? This can...	direct
value_code	0..1 Uriorcurie	Value as code	direct
value_string	0..1 String	Value as string	direct
value_number	0..1 Float	Value as numer	direct
value_units	0..1 Uriorcurie	The structured term defining the units of the value (ucum)	direct
body_site	0..1 Uriorcurie	Location information for the observation, including site, laterality, and oth...	direct
body_location	0..1 Uriorcurie	Any location qualifiers	direct
body_laterality	0..1 Uriorcurie	Laterality information for the condition site	direct
cancer_stage	0..1 Uriorcurie	Cancer staging information	direct

Identifier and Mapping Information

Annotations

property	value
fhir_resource	https://nih-ncpi.github.io/ncpi-fhir-ig-2/StructureDefinition/ncpi-participant-assertion

Schema Source

from schema: https://carrollaboratory.github.io/kfi-fhir-input

Mappings

Mapping Type	Mapped Value
self	kfi_fhir_sparks:ParticipantAssertion
native	kfi_fhir_sparks:ParticipantAssertion

LinkML Source

Direct

name: ParticipantAssertion
annotations:
  fhir_resource:
    tag: fhir_resource
    value: https://nih-ncpi.github.io/ncpi-fhir-ig-2/StructureDefinition/ncpi-participant-assertion
description: Assertion about a particular Participant. May include Conditions, Measurements,
  etc.
title: Participant Assertion
from_schema: https://carrollaboratory.github.io/kfi-fhir-input
slots:
- participant_assertion_id
- participant_id
- age_at_event
- age_at_assertion
- age_at_onset
- age_at_resolution
- entity_asserter
- other_condition_modifiers
- assertion_type
- assertion_code
- assertion_text
- assertion_source
- value_code
- value_string
- value_number
- value_units
- body_site
- body_location
- body_laterality
- cancer_stage
slot_usage:
  participant_id:
    name: participant_id
    annotations:
      fhir_profile:
        tag: fhir_profile
        value: https://nih-ncpi.github.io/ncpi-fhir-ig-2/StructureDefinition/ncpi-participant-assertion
      fhir_element:
        tag: fhir_element
        value: category
      fhir_resource:
        tag: fhir_resource
        value: Observation

Induced

name: ParticipantAssertion
annotations:
  fhir_resource:
    tag: fhir_resource
    value: https://nih-ncpi.github.io/ncpi-fhir-ig-2/StructureDefinition/ncpi-participant-assertion
description: Assertion about a particular Participant. May include Conditions, Measurements,
  etc.
title: Participant Assertion
from_schema: https://carrollaboratory.github.io/kfi-fhir-input
slot_usage:
  participant_id:
    name: participant_id
    annotations:
      fhir_profile:
        tag: fhir_profile
        value: https://nih-ncpi.github.io/ncpi-fhir-ig-2/StructureDefinition/ncpi-participant-assertion
      fhir_element:
        tag: fhir_element
        value: category
      fhir_resource:
        tag: fhir_resource
        value: Observation
attributes:
  participant_assertion_id:
    name: participant_assertion_id
    description: Participant Assertion Global ID
    title: Participant Assertion ID
    from_schema: https://carrollaboratory.github.io/kfi-fhir-input
    rank: 1000
    identifier: true
    alias: participant_assertion_id
    owner: ParticipantAssertion
    domain_of:
    - ParticipantAssertion
    range: string
    required: true
    multivalued: false
  participant_id:
    name: participant_id
    annotations:
      fhir_profile:
        tag: fhir_profile
        value: https://nih-ncpi.github.io/ncpi-fhir-ig-2/StructureDefinition/ncpi-participant-assertion
      fhir_element:
        tag: fhir_element
        value: category
      fhir_resource:
        tag: fhir_resource
        value: Observation
    description: The Global ID for the Participant
    title: Participant ID
    from_schema: https://carrollaboratory.github.io/kfi-fhir-input
    rank: 1000
    alias: participant_id
    owner: ParticipantAssertion
    domain_of:
    - ParticipantAssertion
    - Participant
    - Person
    - StudyMembership
    - Sample
    - NCPIFile
    range: Participant
    required: true
  age_at_event:
    name: age_at_event
    annotations:
      fhir_profile:
        tag: fhir_profile
        value: https://nih-ncpi.github.io/ncpi-fhir-ig-2/StructureDefinition/ncpi-participant-assertion
      fhir_element:
        tag: fhir_element
        value: component[ageAtEvent] or maybe effectiveDateTime
      fhir_resource:
        tag: fhir_resource
        value: Observation
    description: The date or age at which the event relating to this assertion occured.
    title: Age At Event
    from_schema: https://carrollaboratory.github.io/kfi-fhir-input
    rank: 1000
    alias: age_at_event
    owner: ParticipantAssertion
    domain_of:
    - ParticipantAssertion
    range: AgeAt
    required: false
    multivalued: false
  age_at_assertion:
    name: age_at_assertion
    annotations:
      fhir_profile:
        tag: fhir_profile
        value: https://nih-ncpi.github.io/ncpi-fhir-ig-2/StructureDefinition/ncpi-participant-assertion
      fhir_element:
        tag: fhir_element
        value: component[ageAtAssertion]
      fhir_resource:
        tag: fhir_resource
        value: Observation
    description: The date or age at which this condition is being asserted.
    title: Age At Assertion
    from_schema: https://carrollaboratory.github.io/kfi-fhir-input
    rank: 1000
    alias: age_at_assertion
    owner: ParticipantAssertion
    domain_of:
    - ParticipantAssertion
    range: AgeAt
    required: false
    multivalued: false
  age_at_onset:
    name: age_at_onset
    annotations:
      fhir_profile:
        tag: fhir_profile
        value: https://nih-ncpi.github.io/ncpi-fhir-ig-2/StructureDefinition/ncpi-participant-assertion
      fhir_element:
        tag: fhir_element
        value: component[ageAtOnset]
      fhir_resource:
        tag: fhir_resource
        value: Observation
    description: The age of onset for this condition. Could be expressed with a term,
      an age, or an age range.
    title: Age At Onset
    from_schema: https://carrollaboratory.github.io/kfi-fhir-input
    rank: 1000
    alias: age_at_onset
    owner: ParticipantAssertion
    domain_of:
    - ParticipantAssertion
    range: AgeAt
    required: false
    multivalued: false
  age_at_resolution:
    name: age_at_resolution
    annotations:
      fhir_profile:
        tag: fhir_profile
        value: https://nih-ncpi.github.io/ncpi-fhir-ig-2/StructureDefinition/ncpi-participant-assertion
      fhir_element:
        tag: fhir_element
        value: component[ageAtResolution]
      fhir_resource:
        tag: fhir_resource
        value: Observation
    description: The age at which this condition was resolved, abated, or cured. Should
      be left empty in cases of current active status. Could be expressed with a term,
      an age, or an age range.
    title: Age At Resolution
    from_schema: https://carrollaboratory.github.io/kfi-fhir-input
    rank: 1000
    alias: age_at_resolution
    owner: ParticipantAssertion
    domain_of:
    - ParticipantAssertion
    range: AgeAt
    required: false
    multivalued: false
  entity_asserter:
    name: entity_asserter
    annotations:
      fhir_profile:
        tag: fhir_profile
        value: https://nih-ncpi.github.io/ncpi-fhir-ig-2/StructureDefinition/ncpi-participant-assertion
      fhir_extension:
        tag: fhir_extension
        value: https://nih-ncpi.github.io/ncpi-fhir-ig-2/StructureDefinition/entity-asserter
      fhir_resource:
        tag: fhir_resource
        value: Observation
    description: Who recorded this assertion about the Participant? This can support
      understanding the differences between self-report, doctor, trained research
      staff.
    title: Entity Asserter
    from_schema: https://carrollaboratory.github.io/kfi-fhir-input
    rank: 1000
    alias: entity_asserter
    owner: ParticipantAssertion
    domain_of:
    - ParticipantAssertion
    range: EnumEntityAsserter
    required: false
    multivalued: false
  other_condition_modifiers:
    name: other_condition_modifiers
    annotations:
      fhir_profile:
        tag: fhir_profile
        value: https://nih-ncpi.github.io/ncpi-fhir-ig-2/StructureDefinition/ncpi-participant-assertion
      fhir_element:
        tag: fhir_element
        value: component[otherModifiers]
      fhir_resource:
        tag: fhir_resource
        value: Observation
    description: Any additional modifiers for this condition, such as severity.
    title: Other Condition Modifiers
    from_schema: https://carrollaboratory.github.io/kfi-fhir-input
    rank: 1000
    alias: other_condition_modifiers
    owner: ParticipantAssertion
    domain_of:
    - ParticipantAssertion
    range: uriorcurie
    required: false
    multivalued: false
  assertion_type:
    name: assertion_type
    annotations:
      fhir_profile:
        tag: fhir_profile
        value: https://nih-ncpi.github.io/ncpi-fhir-ig-2/StructureDefinition/ncpi-participant-assertion
      fhir_element:
        tag: fhir_element
        value: category
      fhir_resource:
        tag: fhir_resource
        value: Observation
    description: Describe the type of assertion being made.
    title: Assertion Type
    from_schema: https://carrollaboratory.github.io/kfi-fhir-input
    rank: 1000
    alias: assertion_type
    owner: ParticipantAssertion
    domain_of:
    - ParticipantAssertion
    range: EnumAssertionType
    required: true
    multivalued: false
  assertion_code:
    name: assertion_code
    annotations:
      fhir_profile:
        tag: fhir_profile
        value: https://nih-ncpi.github.io/ncpi-fhir-ig-2/StructureDefinition/ncpi-participant-assertion
      fhir_element:
        tag: fhir_element
        value: code.coding
      fhir_resource:
        tag: fhir_resource
        value: Observation
    description: The structured term defining the meaning of the assertion.
    title: Assertion Code
    from_schema: https://carrollaboratory.github.io/kfi-fhir-input
    rank: 1000
    alias: assertion_code
    owner: ParticipantAssertion
    domain_of:
    - ParticipantAssertion
    range: uriorcurie
    required: true
    multivalued: false
  assertion_text:
    name: assertion_text
    annotations:
      fhir_profile:
        tag: fhir_profile
        value: https://nih-ncpi.github.io/ncpi-fhir-ig-2/StructureDefinition/ncpi-participant-assertion
      fhir_element:
        tag: fhir_element
        value: code.text
      fhir_resource:
        tag: fhir_resource
        value: Observation
    description: Detailed description / free text about this assertion.
    title: Assertion Text
    from_schema: https://carrollaboratory.github.io/kfi-fhir-input
    rank: 1000
    alias: assertion_text
    owner: ParticipantAssertion
    domain_of:
    - ParticipantAssertion
    range: string
    required: false
    multivalued: false
  assertion_source:
    name: assertion_source
    annotations:
      fhir_profile:
        tag: fhir_profile
        value: https://nih-ncpi.github.io/ncpi-fhir-ig-2/StructureDefinition/ncpi-participant-assertion
      fhir_element:
        tag: fhir_element
        value: method
      fhir_resource:
        tag: fhir_resource
        value: Observation
    description: Where or how was this this assertion about the Participant recorded?
      This can support understanding the differences between surveys, automated EHR
      extraction, manual chart abstraction, etc.
    title: Assertion Source
    from_schema: https://carrollaboratory.github.io/kfi-fhir-input
    rank: 1000
    alias: assertion_source
    owner: ParticipantAssertion
    domain_of:
    - ParticipantAssertion
    range: uriorcurie
    required: false
    multivalued: false
  value_code:
    name: value_code
    annotations:
      fhir_profile:
        tag: fhir_profile
        value: https://nih-ncpi.github.io/ncpi-fhir-ig-2/StructureDefinition/ncpi-participant-assertion
      fhir_element:
        tag: fhir_element
        value: valueCodeableConcept
      fhir_resource:
        tag: fhir_resource
        value: Observation
    description: Value as code
    title: Value Code
    from_schema: https://carrollaboratory.github.io/kfi-fhir-input
    rank: 1000
    alias: value_code
    owner: ParticipantAssertion
    domain_of:
    - ParticipantAssertion
    range: uriorcurie
    required: false
    multivalued: false
  value_string:
    name: value_string
    annotations:
      fhir_profile:
        tag: fhir_profile
        value: https://nih-ncpi.github.io/ncpi-fhir-ig-2/StructureDefinition/ncpi-participant-assertion
      fhir_element:
        tag: fhir_element
        value: valueString
      fhir_resource:
        tag: fhir_resource
        value: Observation
    description: Value as string
    title: Value String
    from_schema: https://carrollaboratory.github.io/kfi-fhir-input
    rank: 1000
    alias: value_string
    owner: ParticipantAssertion
    domain_of:
    - ParticipantAssertion
    range: string
    required: false
    multivalued: false
  value_number:
    name: value_number
    annotations:
      fhir_profile:
        tag: fhir_profile
        value: https://nih-ncpi.github.io/ncpi-fhir-ig-2/StructureDefinition/ncpi-participant-assertion
      fhir_element:
        tag: fhir_element
        value: valueQuantity, valueInteger
      fhir_resource:
        tag: fhir_resource
        value: Observation
    description: Value as numer
    title: Value Number
    from_schema: https://carrollaboratory.github.io/kfi-fhir-input
    rank: 1000
    alias: value_number
    owner: ParticipantAssertion
    domain_of:
    - ParticipantAssertion
    range: float
    required: false
    multivalued: false
  value_units:
    name: value_units
    annotations:
      fhir_profile:
        tag: fhir_profile
        value: https://nih-ncpi.github.io/ncpi-fhir-ig-2/StructureDefinition/ncpi-participant-assertion
      fhir_resource:
        tag: fhir_resource
        value: Observation
    description: The structured term defining the units of the value (ucum).
    title: Value Units
    from_schema: https://carrollaboratory.github.io/kfi-fhir-input
    rank: 1000
    alias: value_units
    owner: ParticipantAssertion
    domain_of:
    - ParticipantAssertion
    range: uriorcurie
    required: false
    multivalued: false
  body_site:
    name: body_site
    annotations:
      fhir_profile:
        tag: fhir_profile
        value: https://nih-ncpi.github.io/ncpi-fhir-ig-2/StructureDefinition/ncpi-participant-assertion
      fhir_element:
        tag: fhir_element
        value: bodySite
      fhir_resource:
        tag: fhir_resource
        value: Observation
    description: Location information for the observation, including site, laterality,
      and other qualifiers as appropriate. Multiple observations may be required if
      the same assertion is made in many locations, or complete location details can
      be provided in an NCPI Condition Summary.
    title: Body Site
    from_schema: https://carrollaboratory.github.io/kfi-fhir-input
    rank: 1000
    alias: body_site
    owner: ParticipantAssertion
    domain_of:
    - ParticipantAssertion
    range: uriorcurie
    required: false
    multivalued: false
  body_location:
    name: body_location
    annotations:
      fhir_profile:
        tag: fhir_profile
        value: https://nih-ncpi.github.io/ncpi-fhir-ig-2/StructureDefinition/ncpi-participant-assertion
      fhir_extension:
        tag: fhir_extension
        value: http://hl7.org/fhir/us/mcode/StructureDefinition/mcode-body-location-qualifier
      fhir_resource:
        tag: fhir_resource
        value: Observation
    description: Any location qualifiers
    title: Body Location
    from_schema: https://carrollaboratory.github.io/kfi-fhir-input
    rank: 1000
    alias: body_location
    owner: ParticipantAssertion
    domain_of:
    - ParticipantAssertion
    range: uriorcurie
    required: false
    multivalued: false
  body_laterality:
    name: body_laterality
    annotations:
      fhir_profile:
        tag: fhir_profile
        value: https://nih-ncpi.github.io/ncpi-fhir-ig-2/StructureDefinition/ncpi-participant-assertion
      fhir_extension:
        tag: fhir_extension
        value: http://hl7.org/fhir/us/mcode/StructureDefinition/mcode-laterality-qualifier
      fhir_resource:
        tag: fhir_resource
        value: Observation
    description: Laterality information for the condition site
    title: Laterality Qualifier
    from_schema: https://carrollaboratory.github.io/kfi-fhir-input
    rank: 1000
    alias: body_laterality
    owner: ParticipantAssertion
    domain_of:
    - ParticipantAssertion
    range: uriorcurie
    required: false
    multivalued: false
  cancer_stage:
    name: cancer_stage
    annotations:
      fhir_profile:
        tag: fhir_profile
        value: https://nih-ncpi.github.io/ncpi-fhir-ig-2/StructureDefinition/ncpi-participant-assertion
      fhir_element:
        tag: fhir_element
        value: component[stage]
      fhir_resource:
        tag: fhir_resource
        value: Observation
    description: Cancer staging information
    title: Cancer Stage
    from_schema: https://carrollaboratory.github.io/kfi-fhir-input
    rank: 1000
    alias: cancer_stage
    owner: ParticipantAssertion
    domain_of:
    - ParticipantAssertion
    range: uriorcurie
    required: false
    multivalued: false