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Enum: EnumFileMetaDataType

Identify the type of profile to use

URI: kfi_fhir_sparks:EnumFileMetaDataType

Permissible Values

Value Meaning Description
bam_cram None Bam or Cram file
fastq None FASTQ File
maf None MAF (Somatic Mutation)
proteomics None Proteomics file
vcf None GC or gVCF file

Slots

Name Description
meta_data_type Clarify which type of meta data this file has recorded

Identifier and Mapping Information

Schema Source

  • from schema: https://carrollaboratory.github.io/kfi-fhir-input

LinkML Source

name: EnumFileMetaDataType
description: Identify the type of profile to use
from_schema: https://carrollaboratory.github.io/kfi-fhir-input
rank: 1000
permissible_values:
  bam_cram:
    text: bam_cram
    description: Bam or Cram file
    annotations:
      fhir_profile:
        tag: fhir_profile
        value: https://nih-ncpi.github.io/ncpi-fhir-ig-2/StructureDefinition-ncpi-bamcram.html
    title: BAM/CRAM
  fastq:
    text: fastq
    description: FASTQ File
    annotations:
      fhir_profile:
        tag: fhir_profile
        value: https://nih-ncpi.github.io/ncpi-fhir-ig-2/StructureDefinition-ncpi-fastq.html
    title: FASTQ
  maf:
    text: maf
    description: MAF (Somatic Mutation)
    annotations:
      fhir_profile:
        tag: fhir_profile
        value: https://nih-ncpi.github.io/ncpi-fhir-ig-2/StructureDefinition-ncpi-maf.html
    title: MAF (Somatic Mutation) file
  proteomics:
    text: proteomics
    description: Proteomics file
    annotations:
      fhir_profile:
        tag: fhir_profile
        value: https://nih-ncpi.github.io/ncpi-fhir-ig-2/StructureDefinition-ncpi-proteomics.html
    title: Proteomics file
  vcf:
    text: vcf
    description: GC or gVCF file
    annotations:
      fhir_profile:
        tag: fhir_profile
        value: https://nih-ncpi.github.io/ncpi-fhir-ig-2/StructureDefinition-ncpi-vcf.html
    title: VCF (and gVCF) file